Detailed information of SNP:
|
SNP ID:
sf1103550901(Gbrowse)
Chromosome: chr11 Position: 3550901 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1342 | 97.62% | 2.38% |
| All Indica | 725 | 95.86% | 4.14% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 343 | 97.96% | 2.04% |
| Indica II | 186 | 94.09% | 5.91% |
| Indica Intermediate | 196 | 93.88% | 6.12% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1103550901 | C->T | INTERGENIC | None |