Detailed information of SNP:
|
SNP ID:
sf1103571785(Gbrowse)
Chromosome: chr11 Position: 3571785 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 50.49% | 49.51% |
| All Indica | 798 | 74.81% | 25.19% |
| All Japonica | 497 | 5.63% | 94.37% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 212 | 36.32% | 63.68% |
| Indica Intermediate | 211 | 78.20% | 21.80% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 19.15% | 80.85% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1103571785 | G->A | INTERGENIC | None |