Detailed information of SNP:
|
SNP ID:
sf1103571817(Gbrowse)
Chromosome: chr11 Position: 3571817 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 50.35% | 49.65% |
| All Indica | 798 | 74.69% | 25.31% |
| All Japonica | 497 | 5.63% | 94.37% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 212 | 36.32% | 63.68% |
| Indica Intermediate | 211 | 77.73% | 22.27% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 19.15% | 80.85% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1103571817 | G->C | INTERGENIC | None |