Detailed information of SNP:
|
SNP ID:
sf1103599009(Gbrowse)
Chromosome: chr11 Position: 3599009 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1191 | 89.25% | 10.75% |
| All Indica | 630 | 88.25% | 11.75% |
| All Japonica | 472 | 97.03% | 2.97% |
| Aus | 44 | 52.27% | 47.73% |
| Indica I | 337 | 92.28% | 7.72% |
| Indica II | 108 | 69.44% | 30.56% |
| Indica Intermediate | 185 | 91.89% | 8.11% |
| Temperate Japonica | 333 | 99.70% | 0.30% |
| Tropical Japonica | 73 | 86.30% | 13.70% |
| Japonica Intermediate | 66 | 95.45% | 4.55% |
| Group VI/Aromatic | 10 | 0.00% | 100.00% |
| Intermediate | 35 | 74.29% | 25.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1103599009 | G->A | INTERGENIC | None |