Detailed information of SNP:
|
SNP ID:
sf1103599133(Gbrowse)
Chromosome: chr11 Position: 3599133 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1374 | 70.89% | 29.11% |
| All Indica | 788 | 60.79% | 39.21% |
| All Japonica | 475 | 94.11% | 5.89% |
| Aus | 58 | 36.21% | 63.79% |
| Indica I | 374 | 75.13% | 24.87% |
| Indica II | 207 | 23.67% | 76.33% |
| Indica Intermediate | 207 | 71.98% | 28.02% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 77 | 74.03% | 25.97% |
| Japonica Intermediate | 64 | 93.75% | 6.25% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 39 | 58.97% | 41.03% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1103599133 | G->T | INTERGENIC | None |