Detailed information of SNP:
|
SNP ID:
sf1103685091(Gbrowse)
Chromosome: chr11 Position: 3685091 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1378 | 97.31% | 2.69% |
| All Indica | 797 | 99.87% | 0.13% |
| All Japonica | 460 | 92.17% | 7.83% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 305 | 95.08% | 4.92% |
| Tropical Japonica | 93 | 89.25% | 10.75% |
| Japonica Intermediate | 62 | 82.26% | 17.74% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1103685091 | C->T | INTERGENIC | None |