Detailed information of SNP:
|
SNP ID:
sf1103719696(Gbrowse)
Chromosome: chr11 Position: 3719696 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1331 | 96.69% | 3.31% |
| All Indica | 724 | 96.13% | 3.87% |
| All Japonica | 487 | 96.92% | 3.08% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 317 | 97.16% | 2.84% |
| Indica II | 210 | 95.71% | 4.29% |
| Indica Intermediate | 197 | 94.92% | 5.08% |
| Temperate Japonica | 329 | 99.09% | 0.91% |
| Tropical Japonica | 90 | 93.33% | 6.67% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1103719696 | T->C | INTERGENIC | None |