Detailed information of SNP:
|
SNP ID:
sf1103723131(Gbrowse)
Chromosome: chr11 Position: 3723131 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1209 | 84.45% | 15.55% |
| All Indica | 615 | 71.38% | 28.62% |
| All Japonica | 492 | 99.59% | 0.41% |
| Aus | 50 | 88.00% | 12.00% |
| Indica I | 240 | 58.33% | 41.67% |
| Indica II | 210 | 87.62% | 12.38% |
| Indica Intermediate | 165 | 69.70% | 30.30% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 91 | 97.80% | 2.20% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 39 | 89.74% | 10.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1103723131 | C->T | INTERGENIC | None |