Detailed information of SNP:
|
SNP ID:
sf1103854830(Gbrowse)
Chromosome: chr11 Position: 3854830 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 54.91% | 45.09% |
| All Indica | 795 | 40.88% | 59.12% |
| All Japonica | 497 | 87.32% | 12.68% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 59.09% | 40.91% |
| Indica II | 212 | 4.72% | 95.28% |
| Indica Intermediate | 209 | 44.98% | 55.02% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 44.68% | 55.32% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1103854830 | T->C | INTERGENIC | None |