Detailed information of SNP:
|
SNP ID:
sf1103857175(Gbrowse)
Chromosome: chr11 Position: 3857175 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 66.50% | 33.50% |
| All Indica | 797 | 96.36% | 3.64% |
| All Japonica | 496 | 12.50% | 87.50% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 95.98% | 4.02% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 54.26% | 45.74% |
| Japonica Intermediate | 67 | 10.45% | 89.55% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1103857175 | T->C | INTERGENIC | None |