Detailed information of SNP:
|
SNP ID:
sf1103939252(Gbrowse)
Chromosome: chr11 Position: 3939252 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1343 | 51.30% | 48.70% |
| All Indica | 734 | 20.84% | 79.16% |
| All Japonica | 495 | 96.16% | 3.84% |
| Aus | 62 | 64.52% | 35.48% |
| Indica I | 341 | 21.41% | 78.59% |
| Indica II | 201 | 16.92% | 83.08% |
| Indica Intermediate | 192 | 23.96% | 76.04% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 92 | 84.78% | 15.22% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 13 | 38.46% | 61.54% |
| Intermediate | 39 | 38.46% | 61.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1103939252 | A->T | LOC_Os11g07730(LOC_Os11g07730.1) | INTRON |