Detailed information of SNP:
|
SNP ID:
sf1103939297(Gbrowse)
Chromosome: chr11 Position: 3939297 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1290 | 58.06% | 41.94% |
| All Indica | 687 | 30.86% | 69.14% |
| All Japonica | 491 | 96.74% | 3.26% |
| Aus | 58 | 67.24% | 32.76% |
| Indica I | 311 | 34.73% | 65.27% |
| Indica II | 188 | 22.34% | 77.66% |
| Indica Intermediate | 188 | 32.98% | 67.02% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 89 | 87.64% | 12.36% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 40 | 45.00% | 55.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1103939297 | C->T | LOC_Os11g07730(LOC_Os11g07730.1) | Non-Synonymous SNP |