Detailed information of SNP:
|
SNP ID:
sf1103948844(Gbrowse)
Chromosome: chr11 Position: 3948844 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 61.80% | 38.20% |
| All Indica | 794 | 96.35% | 3.65% |
| All Japonica | 496 | 5.65% | 94.35% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 211 | 97.63% | 2.37% |
| Indica Intermediate | 208 | 92.79% | 7.21% |
| Temperate Japonica | 334 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1103948844 | C->G | LOC_Os11g07740(LOC_Os11g07740.1) | Synonymous |