Detailed information of SNP:



SNP ID: sf1103957242(Gbrowse)

Chromosome: chr11

Position: 3957242
Major allele: G

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1418 65.37% 34.63%
All Indica798 98.12% 1.88%
All Japonica497 6.04% 93.96%
Aus67 100.00% 0.00%
Indica I375 99.73% 0.27%
Indica II213 98.12% 1.88%
Indica Intermediate210 95.24% 4.76%
Temperate Japonica335 0.90% 99.10%
Tropical Japonica94 24.47% 75.53%
Japonica Intermediate68 5.88% 94.12%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 78.57% 21.43%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1103957242 A->G LOC_Os11g07780(LOC_Os11g07780.1) INTRON