Detailed information of SNP:
|
SNP ID:
sf1103959363(Gbrowse)
Chromosome: chr11 Position: 3959363 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1219 | 56.77% | 43.23% |
| All Indica | 639 | 95.93% | 4.07% |
| All Japonica | 491 | 4.68% | 95.32% |
| Aus | 43 | 53.49% | 46.51% |
| Indica I | 295 | 96.61% | 3.39% |
| Indica II | 177 | 96.61% | 3.39% |
| Indica Intermediate | 167 | 94.01% | 5.99% |
| Temperate Japonica | 334 | 0.30% | 99.70% |
| Tropical Japonica | 92 | 22.83% | 77.17% |
| Japonica Intermediate | 65 | 1.54% | 98.46% |
| Group VI/Aromatic | 9 | 77.78% | 22.22% |
| Intermediate | 37 | 70.27% | 29.73% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1103959363 | T->G | INTERGENIC | None |