Detailed information of SNP:
|
SNP ID:
sf1103969132(Gbrowse)
Chromosome: chr11 Position: 3969132 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 72.03% | 27.97% |
| All Indica | 795 | 94.97% | 5.03% |
| All Japonica | 488 | 28.89% | 71.11% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 95.71% | 4.29% |
| Indica II | 211 | 95.73% | 4.27% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 332 | 10.54% | 89.46% |
| Tropical Japonica | 91 | 71.43% | 28.57% |
| Japonica Intermediate | 65 | 63.08% | 36.92% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1103969132 | A->G | LOC_Os11g07790(LOC_Os11g07790.1) | Non-Synonymous SNP |