Detailed information of SNP:
|
SNP ID:
sf1103978363(Gbrowse)
Chromosome: chr11 Position: 3978363 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1385 | 94.44% | 5.56% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 463 | 84.23% | 15.77% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 323 | 92.88% | 7.12% |
| Tropical Japonica | 79 | 73.42% | 26.58% |
| Japonica Intermediate | 61 | 52.46% | 47.54% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1103978363 | G->A | LOC_Os11g07800(LOC_Os11g07800.1) | Non-Synonymous SNP |