Detailed information of SNP:
|
SNP ID:
sf1104016669(Gbrowse)
Chromosome: chr11 Position: 4016669 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1280 | 95.55% | 4.45% |
| All Indica | 765 | 94.64% | 5.36% |
| All Japonica | 402 | 97.01% | 2.99% |
| Aus | 64 | 98.44% | 1.56% |
| Indica I | 358 | 94.13% | 5.87% |
| Indica II | 208 | 95.19% | 4.81% |
| Indica Intermediate | 199 | 94.97% | 5.03% |
| Temperate Japonica | 305 | 99.02% | 0.98% |
| Tropical Japonica | 58 | 86.21% | 13.79% |
| Japonica Intermediate | 39 | 97.44% | 2.56% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 37 | 94.59% | 5.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104016669 | G->T | INTERGENIC | None |