Detailed information of SNP:
|
SNP ID:
sf1104123009(Gbrowse)
Chromosome: chr11 Position: 4123009 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 87.31% | 12.69% |
| All Indica | 794 | 90.05% | 9.95% |
| All Japonica | 496 | 89.11% | 10.89% |
| Aus | 66 | 37.88% | 62.12% |
| Indica I | 370 | 79.73% | 20.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 93 | 52.69% | 47.31% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104123009 | C->T | INTERGENIC | None |