Detailed information of SNP:
|
SNP ID:
sf1104132479(Gbrowse)
Chromosome: chr11 Position: 4132479 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 87.31% | 12.69% |
| All Indica | 798 | 90.35% | 9.65% |
| All Japonica | 497 | 88.93% | 11.07% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 374 | 80.48% | 19.52% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 52.13% | 47.87% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104132479 | C->A | LOC_Os11g07970(LOC_Os11g07970.1) | INTRON |