Detailed information of SNP:
|
SNP ID:
sf1104140615(Gbrowse)
Chromosome: chr11 Position: 4140615 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1348 | 74.41% | 25.59% |
| All Indica | 738 | 58.54% | 41.46% |
| All Japonica | 494 | 97.17% | 2.83% |
| Aus | 62 | 85.48% | 14.52% |
| Indica I | 347 | 61.96% | 38.04% |
| Indica II | 189 | 50.79% | 49.21% |
| Indica Intermediate | 202 | 59.90% | 40.10% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 91 | 87.91% | 12.09% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 13 | 61.54% | 38.46% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104140615 | C->T | INTERGENIC | None |