Detailed information of SNP:
|
SNP ID:
sf1104140623(Gbrowse)
Chromosome: chr11 Position: 4140623 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1394 | 64.99% | 35.01% |
| All Indica | 779 | 44.54% | 55.46% |
| All Japonica | 493 | 96.15% | 3.85% |
| Aus | 66 | 77.27% | 22.73% |
| Indica I | 368 | 49.73% | 50.27% |
| Indica II | 207 | 32.37% | 67.63% |
| Indica Intermediate | 204 | 47.55% | 52.45% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 82.61% | 17.39% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104140623 | C->T | INTERGENIC | None |