Detailed information of SNP:
|
SNP ID:
sf1104160495(Gbrowse)
Chromosome: chr11 Position: 4160495 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 53.35% | 46.65% |
| All Indica | 799 | 27.53% | 72.47% |
| All Japonica | 497 | 93.56% | 6.44% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 375 | 37.33% | 62.67% |
| Indica II | 213 | 7.98% | 92.02% |
| Indica Intermediate | 211 | 29.86% | 70.14% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 73.40% | 26.60% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104160495 | G->A | INTERGENIC | None |