Detailed information of SNP:
|
SNP ID:
sf1104169501(Gbrowse)
Chromosome: chr11 Position: 4169501 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 94.72% | 5.28% |
| All Indica | 781 | 91.55% | 8.45% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 363 | 90.36% | 9.64% |
| Indica II | 211 | 92.89% | 7.11% |
| Indica Intermediate | 207 | 92.27% | 7.73% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104169501 | G->A | LOC_Os11g08020(LOC_Os11g08020.1) | INTRON |