Detailed information of SNP:
|
SNP ID:
sf1104172938(Gbrowse)
Chromosome: chr11 Position: 4172938 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 54.84% | 45.16% |
| All Indica | 795 | 87.04% | 12.96% |
| All Japonica | 497 | 6.04% | 93.96% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 375 | 78.67% | 21.33% |
| Indica II | 209 | 96.17% | 3.83% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 25.53% | 74.47% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104172938 | T->A | INTERGENIC | None |