Detailed information of SNP:



SNP ID: sf1104177073(Gbrowse)

Chromosome: chr11

Position: 4177073
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1419 95.56% 4.44%
All Indica799 99.87% 0.13%
All Japonica497 88.33% 11.67%
Aus67 98.51% 1.49%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 99.53% 0.47%
Temperate Japonica335 98.81% 1.19%
Tropical Japonica94 50.00% 50.00%
Japonica Intermediate68 89.71% 10.29%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 92.86% 7.14%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1104177073 C->T INTERGENIC None