Detailed information of SNP:
|
SNP ID:
sf1104189321(Gbrowse)
Chromosome: chr11 Position: 4189321 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 50.36% | 49.64% |
| All Indica | 786 | 20.48% | 79.52% |
| All Japonica | 494 | 94.33% | 5.67% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 371 | 22.37% | 77.63% |
| Indica II | 206 | 25.24% | 74.76% |
| Indica Intermediate | 209 | 12.44% | 87.56% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 92 | 89.13% | 10.87% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 11 | 90.91% | 9.09% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104189321 | G->A | INTERGENIC | None |