Detailed information of SNP:
|
SNP ID:
sf1104200015(Gbrowse)
Chromosome: chr11 Position: 4200015 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1368 | 53.73% | 46.27% |
| All Indica | 760 | 23.68% | 76.32% |
| All Japonica | 493 | 96.75% | 3.25% |
| Aus | 65 | 70.77% | 29.23% |
| Indica I | 362 | 30.11% | 69.89% |
| Indica II | 198 | 17.68% | 82.32% |
| Indica Intermediate | 200 | 18.00% | 82.00% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 91 | 86.81% | 13.19% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 11 | 72.73% | 27.27% |
| Intermediate | 39 | 61.54% | 38.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104200015 | G->A | INTERGENIC | None |