Detailed information of SNP:
|
SNP ID:
sf1104224464(Gbrowse)
Chromosome: chr11 Position: 4224464 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 55.46% | 44.54% |
| All Indica | 799 | 87.11% | 12.89% |
| All Japonica | 497 | 6.24% | 93.76% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 375 | 78.67% | 21.33% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 26.60% | 73.40% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104224464 | C->T | LOC_Os11g08080(LOC_Os11g08080.1) | INTRON |