Detailed information of SNP:
|
SNP ID:
sf1104224470(Gbrowse)
Chromosome: chr11 Position: 4224470 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 55.43% | 44.57% |
| All Indica | 798 | 87.09% | 12.91% |
| All Japonica | 497 | 6.24% | 93.76% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 374 | 78.88% | 21.12% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 25.53% | 74.47% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104224470 | T->G | LOC_Os11g08080(LOC_Os11g08080.1) | INTRON |