Detailed information of SNP:
|
SNP ID:
sf1104251948(Gbrowse)
Chromosome: chr11 Position: 4251948 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 54.03% | 45.97% |
| All Indica | 796 | 85.18% | 14.82% |
| All Japonica | 497 | 5.84% | 94.16% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 374 | 77.27% | 22.73% |
| Indica II | 212 | 92.45% | 7.55% |
| Indica Intermediate | 210 | 91.90% | 8.10% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104251948 | G->A | INTERGENIC | None |