Detailed information of SNP:
|
SNP ID:
sf1104254180(Gbrowse)
Chromosome: chr11 Position: 4254180 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 53.14% | 46.86% |
| All Indica | 797 | 83.69% | 16.31% |
| All Japonica | 497 | 5.63% | 94.37% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 374 | 77.27% | 22.73% |
| Indica II | 212 | 88.68% | 11.32% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104254180 | G->A | INTERGENIC | None |