Detailed information of SNP:
|
SNP ID:
sf1104270311(Gbrowse)
Chromosome: chr11 Position: 4270311 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1324 | 89.12% | 10.88% |
| All Indica | 717 | 81.59% | 18.41% |
| All Japonica | 492 | 99.39% | 0.61% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 338 | 84.32% | 15.68% |
| Indica II | 189 | 79.37% | 20.63% |
| Indica Intermediate | 190 | 78.95% | 21.05% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 90 | 96.67% | 3.33% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 36 | 97.22% | 2.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104270311 | G->A | LOC_Os11g08150(LOC_Os11g08150.1) | Non-Synonymous SNP |