Detailed information of SNP:
|
SNP ID:
sf1104288264(Gbrowse)
Chromosome: chr11 Position: 4288264 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 76.70% | 23.30% |
| All Indica | 792 | 67.55% | 32.45% |
| All Japonica | 497 | 94.37% | 5.63% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 374 | 94.65% | 5.35% |
| Indica II | 211 | 25.59% | 74.41% |
| Indica Intermediate | 207 | 61.35% | 38.65% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104288264 | T->A | INTERGENIC | None |