Detailed information of SNP:
|
SNP ID:
sf1104291676(Gbrowse)
Chromosome: chr11 Position: 4291676 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 55.04% | 44.96% |
| All Indica | 799 | 86.73% | 13.27% |
| All Japonica | 497 | 6.04% | 93.96% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 375 | 78.67% | 21.33% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 25.53% | 74.47% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104291676 | C->T | LOC_Os11g08200(LOC_Os11g08200.1) | Synonymous |