Detailed information of SNP:
|
SNP ID:
sf1104296045(Gbrowse)
Chromosome: chr11 Position: 4296045 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 67.44% | 32.56% |
| All Indica | 798 | 59.77% | 40.23% |
| All Japonica | 497 | 83.10% | 16.90% |
| Aus | 65 | 72.31% | 27.69% |
| Indica I | 374 | 93.32% | 6.68% |
| Indica II | 213 | 12.68% | 87.32% |
| Indica Intermediate | 211 | 47.87% | 52.13% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 27.66% | 72.34% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104296045 | C->G | LOC_Os11g08210(LOC_Os11g08210.1) | Synonymous |