Detailed information of SNP:
|
SNP ID:
sf1104302350(Gbrowse)
Chromosome: chr11 Position: 4302350 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 73.21% | 26.79% |
| All Indica | 787 | 62.13% | 37.87% |
| All Japonica | 497 | 93.56% | 6.44% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 373 | 94.10% | 5.90% |
| Indica II | 211 | 15.17% | 84.83% |
| Indica Intermediate | 203 | 52.22% | 47.78% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 74.47% | 25.53% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104302350 | C->T | INTERGENIC | None |