Detailed information of SNP:
|
SNP ID:
sf1104306414(Gbrowse)
Chromosome: chr11 Position: 4306414 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1381 | 75.09% | 24.91% |
| All Indica | 764 | 62.04% | 37.96% |
| All Japonica | 496 | 95.16% | 4.84% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 364 | 92.03% | 7.97% |
| Indica II | 204 | 17.16% | 82.84% |
| Indica Intermediate | 196 | 53.06% | 46.94% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 77.42% | 22.58% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104306414 | A->G | INTERGENIC | None |