Detailed information of SNP:
|
SNP ID:
sf1104309233(Gbrowse)
Chromosome: chr11 Position: 4309233 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 55.67% | 44.33% |
| All Indica | 799 | 87.23% | 12.77% |
| All Japonica | 497 | 6.44% | 93.56% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 375 | 78.13% | 21.87% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 25.53% | 74.47% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104309233 | A->T | INTERGENIC | None |