Detailed information of SNP:
|
SNP ID:
sf1104309666(Gbrowse)
Chromosome: chr11 Position: 4309666 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 55.11% | 44.89% |
| All Indica | 799 | 86.98% | 13.02% |
| All Japonica | 497 | 5.84% | 94.16% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 375 | 78.13% | 21.87% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 25.53% | 74.47% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104309666 | A->G | INTERGENIC | None |