Detailed information of SNP:
|
SNP ID:
sf1104311843(Gbrowse)
Chromosome: chr11 Position: 4311843 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 54.47% | 45.53% |
| All Indica | 790 | 86.20% | 13.80% |
| All Japonica | 497 | 6.04% | 93.96% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 373 | 76.94% | 23.06% |
| Indica II | 208 | 96.15% | 3.85% |
| Indica Intermediate | 209 | 92.82% | 7.18% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 25.53% | 74.47% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104311843 | A->G | INTERGENIC | None |