Detailed information of SNP:
|
SNP ID:
sf1104312495(Gbrowse)
Chromosome: chr11 Position: 4312495 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 50.49% | 49.51% |
| All Indica | 796 | 79.77% | 20.23% |
| All Japonica | 497 | 5.43% | 94.57% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 374 | 73.80% | 26.20% |
| Indica II | 212 | 84.91% | 15.09% |
| Indica Intermediate | 210 | 85.24% | 14.76% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 23.40% | 76.60% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104312495 | A->T | INTERGENIC | None |