Detailed information of SNP:
|
SNP ID:
sf1104320500(Gbrowse)
Chromosome: chr11 Position: 4320500 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1398 | 70.46% | 29.54% |
| All Indica | 780 | 56.79% | 43.21% |
| All Japonica | 496 | 94.15% | 5.85% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 363 | 91.74% | 8.26% |
| Indica II | 212 | 11.79% | 88.21% |
| Indica Intermediate | 205 | 41.46% | 58.54% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 75.27% | 24.73% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104320500 | G->A | LOC_Os11g08230(LOC_Os11g08230.1) | INTRON |