Detailed information of SNP:
|
SNP ID:
sf1104321428(Gbrowse)
Chromosome: chr11 Position: 4321428 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 53.63% | 46.37% |
| All Indica | 799 | 84.73% | 15.27% |
| All Japonica | 497 | 5.43% | 94.57% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 375 | 77.33% | 22.67% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 22.34% | 77.66% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104321428 | A->T | LOC_Os11g08230(LOC_Os11g08230.1) | Non-Synonymous SNP |
| sf1104321428 | A->T | LOC_Os11g08235(LOC_Os11g08235.1) | Non-Synonymous SNP |