Detailed information of SNP:
|
SNP ID:
sf1104340224(Gbrowse)
Chromosome: chr11 Position: 4340224 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 55.45% | 44.55% |
| All Indica | 795 | 88.05% | 11.95% |
| All Japonica | 497 | 8.85% | 91.15% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 372 | 79.03% | 20.97% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 35.11% | 64.89% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104340224 | A->G | INTERGENIC | None |