Detailed information of SNP:
|
SNP ID:
sf1104365565(Gbrowse)
Chromosome: chr11 Position: 4365565 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 72.88% | 27.12% |
| All Indica | 793 | 62.04% | 37.96% |
| All Japonica | 497 | 92.35% | 7.65% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 211 | 17.54% | 82.46% |
| Indica Intermediate | 207 | 50.24% | 49.76% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104365565 | G->A | INTERGENIC | None |