Detailed information of SNP:
|
SNP ID:
sf1104395525(Gbrowse)
Chromosome: chr11 Position: 4395525 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 65.89% | 34.11% |
| All Indica | 799 | 47.93% | 52.07% |
| All Japonica | 497 | 94.97% | 5.03% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 375 | 76.80% | 23.20% |
| Indica II | 213 | 15.96% | 84.04% |
| Indica Intermediate | 211 | 28.91% | 71.09% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104395525 | C->T | INTERGENIC | None |