Detailed information of SNP:
|
SNP ID:
sf1104407461(Gbrowse)
Chromosome: chr11 Position: 4407461 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 65.30% | 34.70% |
| All Indica | 796 | 46.86% | 53.14% |
| All Japonica | 497 | 94.37% | 5.63% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 374 | 48.66% | 51.34% |
| Indica II | 211 | 70.62% | 29.38% |
| Indica Intermediate | 211 | 19.91% | 80.09% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 73.40% | 26.60% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104407461 | A->G | INTERGENIC | None |