Detailed information of SNP:
|
SNP ID:
sf1104417993(Gbrowse)
Chromosome: chr11 Position: 4417993 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 97.59% | 2.41% |
| All Indica | 794 | 96.60% | 3.40% |
| All Japonica | 495 | 98.99% | 1.01% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 98.13% | 1.87% |
| Indica II | 211 | 96.21% | 3.79% |
| Indica Intermediate | 209 | 94.26% | 5.74% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104417993 | T->C | LOC_Os11g08390(LOC_Os11g08390.1) | Synonymous |