Detailed information of SNP:
|
SNP ID:
sf1104418010(Gbrowse)
Chromosome: chr11 Position: 4418010 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1384 | 95.01% | 4.99% |
| All Indica | 767 | 91.79% | 8.21% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 362 | 92.27% | 7.73% |
| Indica II | 197 | 90.36% | 9.64% |
| Indica Intermediate | 208 | 92.31% | 7.69% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104418010 | C->T | LOC_Os11g08390(LOC_Os11g08390.1) | Non-Synonymous SNP |